PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538709.1_FGP039
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 555aa    MW: 61066.5 Da    PI: 4.5726
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538709.1_FGP039genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.51.1e-511715493373
               GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                        +lLl+ A av++gd+  a+a+++rl +l a  +g+         +  la yf+++L+ r+++         +++++s   s     a+++++
  KN538709.1_FGP039 171 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatspVVDHLAYYFARGLKLRISG---------AATPAS---SLPPSPAYRMLQ 250
                        689999********************998777775567777766899***************.........222222...45567899**** PP

               GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                        e++P++kf+h+taNqaIlea++ +  vH++Df++++G+QW +L+  La   R     ++pp + +  v+  +   + ++   ++ L++fAe+
  KN538709.1_FGP039 251 ELTPFVKFAHFTANQAILEATADDLDVHVVDFNVGEGVQWSSLMSDLAaaGRHrsssSKPPLFHLMDVVITSGAGTPRTADARRWLSEFAES 342
                        ***********************************************9553445577889******999977779***************** PP

               GRAS 172 lgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse...... 251
                        l++pf+++ l++++ ++l+ e   + +       ++  +     ++   +++l+s  +  +L ++  l+Pk+v+++e e+++ +++      
  KN538709.1_FGP039 343 LHLPFRYTSLHVHDGDELHHELAMICNgsssSSPVILTCDDTTTTTT--NTPLRSrLKLLLLGTITILQPKLVILIEDELSRiSKSppppsl 432
                        *****************966555554444434555555555555554..4455552366789*****************999555599**** PP

               GRAS 252 ..sFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                          +F e f++a+ +++a+++s+++ + + +   + + vE+e++g++++++v   g+         +   +++ + G+++ ++s + ++q k+
  KN538709.1_FGP039 433 apPFPEFFSDAVAHFTAVMESTASCFTSYDeeAWLRRVEEEVVGPRVEDAVRRYGSL--------AGGAQKM-MEGLRAREVSGFSVAQGKM 515
                        *9********************98887766335568899999999999999999987........2333344.45***************** PP

               GRAS 340 llrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                        l   ++  g+ v  +e+g l l+Wk+rpL+svS W
  KN538709.1_FGP039 516 LAGLFG-GGFGVVhQEKGRLALCWKSRPLISVSLW 549
                        ******.67876638899999************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.643143530IPR005202Transcription factor GRAS
PfamPF035143.8E-49171549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
METMSYPCSP LIPFSTQFEE ISSSSFLLWS PQAEDNPHEN AIMYGFDGDH SHDQIRQDHE  60
FLDMMVIQES ANEFDGDHSH DQIRQDHEFL DMMVIQESAN GFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAMAGR ENGNFEESAG DLLLAGAMAV  180
DAGDAVHASA IMSRLDDLLA DIAGRRSCEA TSPVVDHLAY YFARGLKLRI SGAATPASSL  240
PPSPAYRMLQ ELTPFVKFAH FTANQAILEA TADDLDVHVV DFNVGEGVQW SSLMSDLAAA  300
GRHRSSSSKP PLFHLMDVVI TSGAGTPRTA DARRWLSEFA ESLHLPFRYT SLHVHDGDEL  360
HHELAMICNG SSSSSPVILT CDDTTTTTTN TPLRSRLKLL LLGTITILQP KLVILIEDEL  420
SRISKSPPPP SLAPPFPEFF SDAVAHFTAV MESTASCFTS YDEEAWLRRV EEEVVGPRVE  480
DAVRRYGSLA GGAQKMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE KGRLALCWKS  540
RPLISVSLWC PKNKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1921654941374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BPD40.0A0A0E0BPD4_9ORYZ; Uncharacterized protein
STRINGBGIOSGA037038-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-14GRAS family protein